Variant report

Variant	rs933240
Chromosome Location	chr20:40979986-40979987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3746536	0.82[AMR][1000 genomes]
rs3746537	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40968200-40987800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:40972800-40980800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr20:40975000-40980800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:40979200-40980000	Enhancers	Fetal Brain Female	brain
5	chr20:40979200-40980400	Enhancers	Fetal Brain Male	brain
6	chr20:40979200-40981000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr20:40979600-40980200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:40979600-40980600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr20:40979800-40980400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr20:40979800-40980800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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