Variant report

Variant	rs9332599
Chromosome Location	chr1:169512980-169512981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169449555..169458933-chr1:169508181..169519645,22	MCF-7	breast:
2	chr1:169453402..169457978-chr1:169510259..169517954,11	MCF-7	breast:
3	chr1:169509458..169510965-chr1:169512972..169515829,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213062	Chromatin interaction
ENSG00000117479	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10800453	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10800454	0.83[EUR][1000 genomes]
rs1121789	0.80[ASN][1000 genomes]
rs1557570	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557572	0.83[EUR][1000 genomes]
rs2157581	0.81[EUR][1000 genomes]
rs2187953	0.80[ASN][1000 genomes]
rs2239851	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2239852	0.84[EUR][1000 genomes]
rs3766109	0.82[ASN][1000 genomes]
rs3820060	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4524	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4525	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4656185	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4656187	0.81[ASN][1000 genomes]
rs4656687	0.83[EUR][1000 genomes]
rs6016	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6017	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6021	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6030	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6032	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6662593	0.82[ASN][1000 genomes]
rs6662696	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6675244	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6686805	0.84[EUR][1000 genomes]
rs6701330	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7535409	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9287090	0.82[ASN][1000 genomes]
rs9287092	0.82[AFR][1000 genomes]
rs9332596	0.83[EUR][1000 genomes]
rs9332600	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9332619	0.80[ASN][1000 genomes]
rs9332620	0.80[ASN][1000 genomes]
rs9332653	0.93[ASN][1000 genomes]
rs9332665	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169496000-169515200	Strong transcription	Liver	Liver
2	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
3	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
5	chr1:169504000-169515000	Strong transcription	HepG2	liver
6	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
8	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:169508800-169513200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:169509600-169515600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:169510200-169515800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:169510600-169513600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:169510800-169513400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:169510800-169515600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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