Variant report

Variant	rs9332673
Chromosome Location	chr1:169482678-169482679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169475240..169477243-chr1:169482171..169484444,2	MCF-7	breast:
2	chr1:169481648..169484694-chr1:169484880..169487777,3	MCF-7	breast:
3	chr1:169480439..169483097-chr1:169493507..169495167,2	MCF-7	breast:
4	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
5	chr1:169467114..169469226-chr1:169481035..169483350,2	K562	blood:
6	chr1:169451858..169456935-chr1:169476541..169486862,15	MCF-7	breast:
7	chr1:169474592..169479041-chr1:169479760..169483418,4	K562	blood:
8	chr1:169482503..169484196-chr1:169484745..169487680,2	K562	blood:
9	chr1:169481912..169483495-chr1:169489878..169491578,2	MCF-7	breast:
10	chr1:169480009..169482936-chr1:169495810..169499823,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000117479	Chromatin interaction
ENSG00000213062	Chromatin interaction
ENSG00000198734	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10800452	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10919184	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10919185	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12024849	0.95[ASN][1000 genomes]
rs12025910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12405595	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557571	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1800595	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1894693	0.90[AMR][1000 genomes]
rs1894703	0.95[ASN][1000 genomes]
rs2227243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301516	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2301519	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2301520	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2420134	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440913	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6018	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6024	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037	0.84[AMR][1000 genomes]
rs72708008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708039	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs916439	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9332601	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9332609	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9332614	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9332629	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9332639	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9332673	NME7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169478200-169487000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:169478800-169484000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:169478800-169488200	Weak transcription	Small Intestine	intestine
4	chr1:169479400-169485000	Enhancers	Hela-S3	cervix
5	chr1:169480000-169483000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:169480600-169483600	Weak transcription	HepG2	liver
7	chr1:169480800-169483800	Weak transcription	HSMMtube	muscle
8	chr1:169481000-169484000	Weak transcription	Stomach Mucosa	stomach
9	chr1:169481200-169484000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:169481400-169483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:169481400-169485000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:169481800-169483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:169481800-169483800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:169481800-169493000	Strong transcription	Liver	Liver
15	chr1:169482000-169483600	Enhancers	Adipose Nuclei	Adipose
16	chr1:169482000-169484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:169482200-169483000	Enhancers	Osteobl	bone
18	chr1:169482400-169483000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:169482400-169483000	Enhancers	HMEC	breast
20	chr1:169482400-169483000	Enhancers	NHLF	lung
21	chr1:169482400-169483200	Genic enhancers	Monocytes-CD14+_RO01746	blood
22	chr1:169482400-169483200	Enhancers	NHEK	skin
23	chr1:169482600-169482800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:169482600-169482800	Enhancers	Fetal Lung	lung
25	chr1:169482600-169482800	Enhancers	Ovary	ovary
26	chr1:169482600-169483000	Enhancers	Placenta	Placenta
27	chr1:169482600-169483000	Enhancers	Right Atrium	heart
28	chr1:169482600-169483000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr1:169482600-169483000	Enhancers	NHDF-Ad	bronchial
30	chr1:169482600-169483200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr1:169482600-169483200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
32	chr1:169482600-169483200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr1:169482600-169483200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:169482600-169483200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:169482600-169483600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:169482600-169483800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr1:169482600-169490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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