Variant report

Variant	rs9333455
Chromosome Location	chr1:165615561-165615562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr1:165615285-165615572	K562	blood:	n/a	n/a
2	GATA3	chr1:165615099-165615605	MCF-7	breast:	n/a	n/a
3	NR2F2	chr1:165614962-165615644	K562	blood:	n/a	n/a
4	IRF1	chr1:165615142-165615701	K562	blood:	n/a	n/a
5	TEAD4	chr1:165615066-165615624	K562	blood:	n/a	n/a
6	SP1	chr1:165615133-165615624	HCT-116	colon:	n/a	n/a
7	GATA1	chr1:165614527-165616775	PBDE	blood:	n/a	n/a
8	POLR2A	chr1:165615231-165615562	K562	blood:	n/a	n/a
9	POLR2A	chr1:165615296-165615579	K562	blood:	n/a	n/a
10	GATA1	chr1:165615082-165615576	PBDEFetal	blood:	n/a	n/a
11	RCOR1	chr1:165615154-165615604	K562	blood:	n/a	n/a
12	NR2F2	chr1:165615049-165615573	MCF-7	breast:	n/a	n/a
13	GATA2	chr1:165615172-165615599	K562	blood:	n/a	n/a
14	TAL1	chr1:165615156-165615587	K562	blood:	n/a	n/a
15	CBX3	chr1:165615124-165615701	HCT-116	colon:	n/a	n/a
16	NR3C1	chr1:165615186-165615578	A549	lung:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:165598557..165602218-chr1:165613054..165616011,3	K562	blood:
2	chr1:165613866..165617736-chr1:165618258..165621387,4	K562	blood:
3	chr1:165615337..165617742-chr1:165665628..165667715,2	K562	blood:
4	chr1:165615419..165617787-chr1:165619065..165622099,3	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALDH9A1-1	chr1:165614898-165617127	ENSG00000250899
2	lnc-LRRC52-2	chr1:165614898-165617132	NONHSAT007326

No data

Variant related genes	Relation type
MGST3	TF binding region
ENSG00000143149	Chromatin interaction
ENSG00000143198	Chromatin interaction

rs_ID	r²[population]
rs2814472	1.00[CHD][hapmap]
rs9333480	0.87[YRI][hapmap];0.84[AFR][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:165602200-165624200	Weak transcription	Dnd41	blood
3	chr1:165603000-165619800	Weak transcription	HSMMtube	muscle
4	chr1:165603600-165617400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
6	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
7	chr1:165604000-165616000	Weak transcription	Gastric	stomach
8	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:165604600-165620000	Weak transcription	Fetal Brain Female	brain
10	chr1:165604800-165623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:165605000-165620200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:165605200-165620000	Weak transcription	Primary T cells from cord blood	blood
15	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:165605400-165620200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:165605600-165618000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:165605600-165622600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:165606200-165617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:165606400-165619600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:165606800-165616600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:165606800-165622800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:165607200-165618000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:165607200-165619200	Weak transcription	NH-A	brain
26	chr1:165607200-165620000	Weak transcription	Fetal Brain Male	brain
27	chr1:165607200-165623000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:165607400-165617200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:165607400-165620000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:165607400-165620200	Weak transcription	NHLF	lung
31	chr1:165607600-165615800	Weak transcription	Colonic Mucosa	Colon
32	chr1:165608000-165617000	Weak transcription	Fetal Stomach	stomach
33	chr1:165608600-165618200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:165609000-165615600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr1:165609400-165619000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:165609600-165619000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:165609800-165620000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr1:165610000-165617200	Weak transcription	Brain Anterior Caudate	brain
39	chr1:165610400-165616000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:165610600-165616000	Weak transcription	Lung	lung
41	chr1:165610600-165619000	Weak transcription	Placenta	Placenta
42	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
43	chr1:165611000-165616000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:165611200-165619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:165611400-165622400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr1:165611600-165619000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:165611600-165619200	Weak transcription	Osteobl	bone
48	chr1:165611800-165617000	Weak transcription	Fetal Lung	lung
49	chr1:165611800-165617000	Weak transcription	HUVEC	blood vessel
50	chr1:165611800-165617400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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