Variant report

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1486596	0.90[CHB][hapmap]
rs169210	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs199626	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs199629	0.85[ASN][1000 genomes]
rs199630	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs199631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs199632	0.95[CHB][hapmap];0.85[CHD][hapmap]
rs512554	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs514244	0.83[ASN][1000 genomes]
rs565651	0.82[ASN][1000 genomes]
rs6930606	0.86[EUR][1000 genomes]
rs6938975	0.87[EUR][1000 genomes]
rs9341323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342841	0.88[EUR][1000 genomes]
rs9342842	0.88[EUR][1000 genomes]
rs9358959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9360460	0.87[EUR][1000 genomes]
rs9360461	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9341324	LMBRD1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72251400-72255600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:72251800-72255800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:72253200-72254800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:72253200-72255200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:72253400-72254000	Enhancers	HSMM	muscle
6	chr6:72253400-72254200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:72253400-72254600	Enhancers	NHDF-Ad	bronchial
8	chr6:72253400-72254800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:72253400-72254800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:72253400-72255400	Enhancers	Osteobl	bone
11	chr6:72253600-72254000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:72253600-72254000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:72253600-72254000	Flanking Active TSS	NH-A	brain
14	chr6:72253600-72254200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:72253600-72254200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:72253600-72254800	Enhancers	NHLF	lung
17	chr6:72253600-72255000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:72253800-72254200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:72253800-72254400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:72253800-72254400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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