Variant report

Variant	rs9341776
Chromosome Location	chr6:80130029-80130030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SH3BGRL2-2	chr6:80130014-80130121	ENSG00000231533
2	lnc-SH3BGRL2-2	chr6:80129967-80130121	NONHSAT113691
3	lnc-SH3BGRL2-2	chr6:80129867-80130154	NONHSAT113689
4	lnc-SH3BGRL2-2	chr6:80129949-80130121	NONHSAT113690

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12211616	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1030126	chr6:80113449-80209165	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80116200-80131600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:80123600-80131800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:80123800-80130200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:80126400-80131400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:80129400-80130600	Flanking Active TSS	Dnd41	blood
6	chr6:80129600-80130200	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:80129600-80130400	Active TSS	Brain Hippocampus Middle	brain
8	chr6:80129600-80131000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:80129800-80130200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:80129800-80130600	Enhancers	Placenta	Placenta
11	chr6:80129800-80130800	Active TSS	Brain Anterior Caudate	brain
12	chr6:80129800-80130800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:80129800-80131200	Enhancers	NHLF	lung
14	chr6:80129800-80131600	Enhancers	HUVEC	blood vessel
15	chr6:80129800-80133200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:80130000-80130200	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr6:80130000-80130200	Active TSS	Brain Angular Gyrus	brain
18	chr6:80130000-80130200	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:80130000-80130200	Active TSS	Brain Substantia Nigra	brain
20	chr6:80130000-80130600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:80130000-80130800	Enhancers	HSMM	muscle
22	chr6:80130000-80131000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:80130000-80131200	Enhancers	Fetal Muscle Leg	muscle
24	chr6:80130000-80131600	Enhancers	HSMMtube	muscle
25	chr6:80130000-80132200	Enhancers	Fetal Lung	lung

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