Variant report

Variant	rs9343725
Chromosome Location	chr6:78801824-78801825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12234129	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331803	0.91[ASN][1000 genomes]
rs56100142	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60276215	0.86[ASN][1000 genomes]
rs6901875	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928372	0.83[ASN][1000 genomes]
rs6938098	0.92[ASN][1000 genomes]
rs73762502	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73764107	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744794	0.89[ASN][1000 genomes]
rs7763328	0.88[ASN][1000 genomes]
rs7763627	0.89[ASN][1000 genomes]
rs9341723	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343731	0.91[ASN][1000 genomes]
rs9343742	0.87[ASN][1000 genomes]
rs9352563	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9352565	0.89[ASN][1000 genomes]
rs9352566	0.88[ASN][1000 genomes]
rs9352573	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9361357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361375	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9361389	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016961	chr6:78352231-79003866	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538326	chr6:78352231-79003866	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949682	chr6:78355600-79002515	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1809182	chr6:78676019-78905264	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv886233	chr6:78754264-78911267	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2758064	chr6:78795880-79193468	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2759447	chr6:78795880-79193468	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78799800-78803200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:78800600-78802200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:78801000-78803600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:78801400-78803000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:78801400-78803400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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