Variant report

Variant	rs9344223
Chromosome Location	chr6:82502320-82502321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2016762	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs6924771	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7749739	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9361860	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs964909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs999567	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9344223	TPBG	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82497800-82503200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:82499000-82502400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:82499000-82503200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82499800-82503000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:82500800-82507400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:82501600-82502600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:82501800-82502400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:82501800-82502600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:82501800-82502600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:82502200-82502800	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:82502200-82504800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:82502200-82506600	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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