Variant report

Variant	rs9345609
Chromosome Location	chr6:66077188-66077189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1502955	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921968	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv886016	chr6:66002389-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv886018	chr6:66009103-66091351	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv886019	chr6:66009103-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	esv3447152	chr6:66027938-66253181	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv886020	chr6:66030650-66091351	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
10	nsv886021	chr6:66030650-66192399	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv462980	chr6:66039601-66083780	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
12	nsv603434	chr6:66039601-66083780	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
13	nsv886022	chr6:66039601-66091351	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
14	nsv886023	chr6:66039601-66103595	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
15	nsv886024	chr6:66039601-66201364	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
16	nsv886025	chr6:66050797-66192399	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv603435	chr6:66052294-66091351	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv462981	chr6:66052294-66115654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv603436	chr6:66052294-66115654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv462982	chr6:66052294-66122359	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv603437	chr6:66052294-66122359	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1015632	chr6:66056747-66114121	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv520449	chr6:66072542-66091351	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66076000-66077200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links