Variant report

Variant	rs934775
Chromosome Location	chr2:86004894-86004895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:86004849-86004988	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86003504..86005582-chr2:86005800..86007921,2	K562	blood:

Variant related genes	Relation type
ATOH8	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10190632	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs10192235	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13392366	0.88[ASN][1000 genomes]
rs1914821	0.88[CHB][hapmap];0.89[CHD][hapmap];0.90[ASN][1000 genomes]
rs2001593	0.88[ASN][1000 genomes]
rs2139198	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2366818	0.82[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35976024	0.91[EUR][1000 genomes]
rs734042	0.96[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs869778	0.85[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874469	chr2:85973618-86025251	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv874470	chr2:85973618-86028257	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv874471	chr2:85976645-86021919	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1001792	chr2:85983107-86016722	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv535805	chr2:85983107-86016722	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv535806	chr2:85990408-86007918	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs934775	CYP4A22	trans	parietal	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86000200-86010400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:86000400-86006000	Enhancers	Fetal Heart	heart
3	chr2:86000400-86008200	Enhancers	Psoas Muscle	Psoas
4	chr2:86000600-86009200	Enhancers	Right Atrium	heart
5	chr2:86001000-86006800	Weak transcription	Stomach Mucosa	stomach
6	chr2:86001000-86008200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr2:86001200-86012800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr2:86001400-86023000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:86001600-86005400	Strong transcription	Osteobl	bone
10	chr2:86001600-86006600	Enhancers	Left Ventricle	heart
11	chr2:86001600-86011800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:86001600-86020000	Weak transcription	Fetal Brain Female	brain
13	chr2:86001600-86023000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:86001800-86006000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:86001800-86014200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:86002000-86005000	Weak transcription	Fetal Brain Male	brain
17	chr2:86002000-86005400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:86002000-86005800	Weak transcription	Hela-S3	cervix
19	chr2:86002000-86006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:86002200-86005000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr2:86002200-86005600	Weak transcription	Colonic Mucosa	Colon
22	chr2:86002200-86006000	Weak transcription	NHDF-Ad	bronchial
23	chr2:86002200-86008200	Genic enhancers	Stomach Smooth Muscle	stomach
24	chr2:86002200-86012600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr2:86002200-86015800	Weak transcription	A549	lung
26	chr2:86002400-86005800	Enhancers	Right Ventricle	heart
27	chr2:86002400-86011200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:86002600-86007600	Strong transcription	Aorta	Aorta
29	chr2:86002600-86007600	Enhancers	Liver	Liver
30	chr2:86002800-86006000	Genic enhancers	Fetal Muscle Leg	muscle
31	chr2:86002800-86008200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:86002800-86011800	Weak transcription	HSMMtube	muscle
33	chr2:86003000-86005400	Weak transcription	Esophagus	oesophagus
34	chr2:86003000-86007200	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:86003000-86007600	Enhancers	Ovary	ovary
36	chr2:86003000-86007800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:86003200-86007800	Genic enhancers	Lung	lung
38	chr2:86003400-86008600	Genic enhancers	Fetal Lung	lung
39	chr2:86003600-86007600	Enhancers	Brain Cingulate Gyrus	brain
40	chr2:86003600-86008400	Genic enhancers	HSMM	muscle
41	chr2:86003800-86006000	Enhancers	Spleen	Spleen
42	chr2:86004000-86005200	Genic enhancers	Fetal Stomach	stomach
43	chr2:86004000-86005400	Enhancers	Duodenum Mucosa	Duodenum
44	chr2:86004000-86005400	Weak transcription	Pancreas	Pancrea
45	chr2:86004000-86005800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr2:86004000-86006600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr2:86004000-86014000	Weak transcription	Gastric	stomach
48	chr2:86004200-86005000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:86004200-86005200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr2:86004200-86005200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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