Variant report

Variant	rs9347819
Chromosome Location	chr6:164549712-164549713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11759664	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62435914	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9346993	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9346994	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9356185	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9364720	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv5583	chr6:164541423-164559515	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv435834	chr6:164542824-164549853	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv511318	chr6:164543238-164549712	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1800866	chr6:164543674-164549712	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv605213	chr6:164543739-164549985	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv605220	chr6:164544314-164549712	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv605226	chr6:164544760-164549712	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164543600-164554400	Weak transcription	Pancreas	Pancrea
2	chr6:164549000-164551000	Weak transcription	Right Ventricle	heart
3	chr6:164549200-164551000	Weak transcription	Fetal Heart	heart
4	chr6:164549600-164550000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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