Variant report

Variant	rs9347903
Chromosome Location	chr6:165114404-165114405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1912669	0.94[ASN][1000 genomes]
rs55776777	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55784848	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59034682	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9356244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9364755	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9364756	0.93[ASN][1000 genomes]
rs9365753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9365754	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830861	chr6:165014475-165231204	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv525815	chr6:165017873-165262895	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605234	chr6:165054409-165130872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165111200-165117600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:165111400-165115000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:165111800-165114800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:165111800-165114800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:165112000-165114800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:165112200-165114800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:165112200-165114800	Weak transcription	Fetal Brain Male	brain
8	chr6:165112200-165115000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:165112200-165115000	Weak transcription	Fetal Brain Female	brain
10	chr6:165112200-165117200	Enhancers	Brain Germinal Matrix	brain
11	chr6:165112600-165115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:165112800-165114800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:165113200-165116400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:165113200-165117800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:165113200-165118000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:165113400-165115200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:165113400-165117600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:165113600-165116800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:165113800-165114800	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:165113800-165114800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr6:165113800-165116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:165113800-165117200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:165113800-165117400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:165113800-165117800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:165114000-165114800	Enhancers	Brain Angular Gyrus	brain
26	chr6:165114000-165116600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:165114200-165114800	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:165114200-165115000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:165114200-165115000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:165114200-165115600	Weak transcription	Brain Anterior Caudate	brain
31	chr6:165114400-165117200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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