Variant report

Variant	rs934815
Chromosome Location	chr4:166251880-166251881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166248835..166250547-chr4:166251406..166253034,2	MCF-7	breast:
2	chr4:166251079..166252856-chr4:166258884..166260563,2	MCF-7	breast:
3	chr4:166249129..166252121-chr4:166265324..166266921,2	K562	blood:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13353819	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530043	0.86[ASN][1000 genomes]
rs28678592	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34317779	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4588420	0.81[EUR][1000 genomes]
rs55672136	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56022310	0.82[EUR][1000 genomes]
rs56058314	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56245360	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56326646	0.80[EUR][1000 genomes]
rs57162477	0.82[EUR][1000 genomes]
rs72701608	0.81[EUR][1000 genomes]
rs72701615	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72701618	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7681175	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs934815	KLHL2	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166247800-166253600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:166248000-166252000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:166248000-166253200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:166248000-166253600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:166249600-166254000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:166249600-166254000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
8	chr4:166249800-166252200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:166249800-166255000	Weak transcription	Placenta	Placenta
10	chr4:166249800-166262400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:166249800-166262600	Weak transcription	Thymus	Thymus
12	chr4:166250000-166252000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:166250000-166253600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:166250000-166254600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:166250200-166254000	Enhancers	Fetal Lung	lung
17	chr4:166250200-166254000	Transcr. at gene 5' and 3'	K562	blood
18	chr4:166250200-166259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:166250200-166260400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr4:166250200-166260800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:166250200-166262600	Weak transcription	Spleen	Spleen
22	chr4:166250200-166262800	Weak transcription	Right Ventricle	heart
23	chr4:166250200-166263800	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
25	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:166250400-166252400	Enhancers	Ovary	ovary
27	chr4:166250400-166253000	Weak transcription	Right Atrium	heart
28	chr4:166250400-166254000	Transcr. at gene 5' and 3'	Dnd41	blood
29	chr4:166250400-166255000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr4:166250400-166255000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:166250400-166255200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:166250400-166255400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:166250400-166255800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:166250400-166256000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:166250400-166259600	Weak transcription	Fetal Kidney	kidney
36	chr4:166250400-166260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:166250400-166260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:166250400-166262600	Weak transcription	Aorta	Aorta
39	chr4:166250600-166252000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr4:166250600-166252600	Weak transcription	Small Intestine	intestine
41	chr4:166250600-166253200	Weak transcription	Fetal Heart	heart
42	chr4:166250600-166253600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:166250600-166254000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:166250600-166254600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:166250600-166255000	Weak transcription	Primary B cells from cord blood	blood
46	chr4:166250600-166256200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:166250600-166259800	Weak transcription	Adipose Nuclei	Adipose
48	chr4:166250600-166259800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:166250600-166263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon

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