Variant report

Variant	rs9349045
Chromosome Location	chr6:37538529-37538530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37536709..37539290-chr6:37640782..37642683,2	MCF-7	breast:
2	chr6:37538192..37539787-chr6:37543021..37546042,3	MCF-7	breast:
3	chr6:37536776..37539580-chr6:37592890..37596522,3	MCF-7	breast:
4	chr6:37451478..37453334-chr6:37536422..37539056,2	MCF-7	breast:
5	chr6:37536721..37538637-chr6:37643593..37645341,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353597.1-5	chr6:37535492-37539236	NONHSAT112275

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1034138	0.83[ASN][1000 genomes]
rs2776898	0.89[ASN][1000 genomes]
rs2797775	0.86[ASN][1000 genomes]
rs9349046	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380682	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380684	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394438	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv522098	chr6:37532103-37545923	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522466	chr6:37532103-37545923	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762587	chr6:37535730-37545923	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
2	chr6:37537200-37538800	Enhancers	Ovary	ovary
3	chr6:37537400-37538800	Enhancers	Primary B cells from cord blood	blood
4	chr6:37537400-37538800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:37537400-37539400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37537400-37540000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:37537600-37538600	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:37537600-37539000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr6:37537800-37538800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:37537800-37538800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr6:37537800-37539000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:37538000-37538600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:37538000-37538600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:37538200-37538800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37538200-37539000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr6:37538400-37538600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr6:37538400-37538600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37538400-37538600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:37538400-37538600	Bivalent Enhancer	Placenta	Placenta
20	chr6:37538400-37538600	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:37538400-37538800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:37538400-37538800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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