Variant report

Variant	rs9349087
Chromosome Location	chr6:38454433-38454434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10947738	0.92[EUR][1000 genomes]
rs10947739	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13219518	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923809	0.87[EUR][1000 genomes]
rs4236060	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4714162	0.86[AFR][1000 genomes]
rs4714163	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6920488	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9349088	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9369062	0.93[EUR][1000 genomes]
rs9380753	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1022724	chr6:38332368-38454527	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38437000-38455400	Weak transcription	Gastric	stomach
2	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:38446600-38455400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:38449800-38461600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:38450000-38461000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:38450600-38469800	Weak transcription	HSMMtube	muscle
7	chr6:38450800-38455200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:38450800-38458000	Weak transcription	Fetal Lung	lung
9	chr6:38450800-38461600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:38451000-38461000	Weak transcription	Fetal Brain Male	brain
11	chr6:38451600-38471000	Weak transcription	Psoas Muscle	Psoas
12	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
13	chr6:38452800-38455000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:38453400-38457800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:38453400-38458400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:38454000-38461000	Weak transcription	GM12878-XiMat	blood
17	chr6:38454200-38454800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:38454400-38486400	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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