Variant report

Variant	rs9349280
Chromosome Location	chr6:44300585-44300586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7769927	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369476	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9381309	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44296200-44303600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:44297400-44303400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44300200-44300600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:44300200-44301200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:44300400-44300600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44300400-44300600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:44300400-44300600	Bivalent Enhancer	NHDF-Ad	bronchial
8	chr6:44300400-44300800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44300400-44300800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:44300400-44301200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:44300400-44302600	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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