Variant report

Variant	rs9349326
Chromosome Location	chr6:45695564-45695565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12525547	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665312	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16873698	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1932040	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs9369573	0.89[ASN][1000 genomes]
rs9381394	1.00[EUR][1000 genomes]
rs9395112	0.90[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45692600-45695600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:45692800-45695600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:45692800-45695800	Weak transcription	HMEC	breast
4	chr6:45692800-45696400	Weak transcription	Fetal Lung	lung
5	chr6:45692800-45696400	Weak transcription	HSMMtube	muscle
6	chr6:45692800-45696400	Weak transcription	NHEK	skin
7	chr6:45692800-45696400	Weak transcription	Osteobl	bone
8	chr6:45693000-45696400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:45694400-45696400	Weak transcription	Fetal Stomach	stomach
10	chr6:45695000-45695600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:45695000-45696800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:45695200-45696200	Enhancers	Esophagus	oesophagus
13	chr6:45695200-45697200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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