Variant report

Variant	rs9349371
Chromosome Location	chr6:12886313-12886314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12637273..12639578-chr6:12885531..12887268,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9357513	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12867400-12887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:12867600-12886800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:12881600-12886800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:12882000-12886800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:12882200-12886800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:12882400-12886600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:12885200-12886400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:12885200-12886800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:12885200-12888200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:12885400-12886800	Weak transcription	NHDF-Ad	bronchial
11	chr6:12885400-12887600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:12885600-12886800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:12885600-12886800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:12885600-12887400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:12885600-12891800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:12885600-12908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:12885800-12886800	Weak transcription	Fetal Brain Male	brain
18	chr6:12885800-12887000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:12885800-12887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:12885800-12887000	Weak transcription	Brain Germinal Matrix	brain
21	chr6:12885800-12887400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:12885800-12887400	Weak transcription	Fetal Brain Female	brain
23	chr6:12886000-12886400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:12886200-12886600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:12886200-12886600	Weak transcription	Fetal Kidney	kidney

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