Variant report
Variant | rs9349485 |
---|---|
Chromosome Location | chr6:49312267-49312268 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10484964 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10807405 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12199085 | 0.85[AMR][1000 genomes] |
rs4580869 | 0.85[EUR][1000 genomes] |
rs4585547 | 0.85[EUR][1000 genomes] |
rs490909 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs496864 | 0.81[CHB][hapmap] |
rs55755140 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs562279 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6458692 | 0.81[EUR][1000 genomes] |
rs67879073 | 0.84[AMR][1000 genomes] |
rs67923053 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs68181515 | 0.82[AMR][1000 genomes] |
rs6941276 | 0.82[EUR][1000 genomes] |
rs72868457 | 0.82[AMR][1000 genomes] |
rs9296615 | 0.85[EUR][1000 genomes] |
rs9349481 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs9357605 | 0.82[AMR][1000 genomes] |
rs9367354 | 0.85[EUR][1000 genomes] |
rs9369874 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs9369875 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs9369900 | 0.85[EUR][1000 genomes] |
rs9381758 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs9381786 | 0.82[EUR][1000 genomes] |
rs9395490 | 0.85[EUR][1000 genomes] |
rs9395494 | 0.82[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024959 | chr6:49290141-49652124 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv1021136 | chr6:49295037-49631278 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:49310800-49328000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |