Variant report

Variant	rs9349618
Chromosome Location	chr6:13434581-13434582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13430517..13435196-chr6:13435654..13440896,5	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1345029	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1345030	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17768735	0.90[EUR][1000 genomes]
rs1992385	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61657352	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62385764	0.93[ASN][1000 genomes]
rs62385768	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62385769	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62385771	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9395787	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3475105	chr6:13434305-13434823	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3475106	chr6:13434305-13434823	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13428800-13451200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13429000-13436000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:13429200-13436200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:13429400-13434600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:13429600-13435400	Weak transcription	Small Intestine	intestine
6	chr6:13429800-13436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:13429800-13436600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:13430000-13436600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:13430000-13437800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:13430000-13445000	Weak transcription	NHEK	skin
11	chr6:13430600-13435800	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:13430800-13436400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:13431000-13434600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:13431800-13435600	Enhancers	Adipose Nuclei	Adipose
15	chr6:13432000-13434600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:13432000-13436200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:13432200-13434600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:13432200-13436000	Enhancers	Left Ventricle	heart
19	chr6:13432200-13436200	Enhancers	Spleen	Spleen
20	chr6:13432200-13438200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:13432400-13435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:13432600-13434800	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:13432600-13435000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:13432600-13435800	Weak transcription	A549	lung
25	chr6:13432600-13445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:13432800-13438200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:13433000-13435200	Weak transcription	Liver	Liver
28	chr6:13433000-13435600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:13433000-13438200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:13433000-13454000	Weak transcription	Hela-S3	cervix
31	chr6:13433200-13434800	Weak transcription	HepG2	liver
32	chr6:13433200-13435800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:13433200-13436200	Weak transcription	NHLF	lung
34	chr6:13433200-13437000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:13433200-13437000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:13433200-13437200	Weak transcription	Thymus	Thymus
37	chr6:13433200-13437200	Weak transcription	K562	blood
38	chr6:13433200-13440000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:13433200-13440200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:13433200-13442000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:13433200-13445200	Weak transcription	Brain Angular Gyrus	brain
42	chr6:13433400-13434600	Enhancers	Psoas Muscle	Psoas
43	chr6:13433400-13436800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:13433600-13445400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:13433800-13435000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:13434000-13434600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:13434000-13435000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr6:13434000-13435400	Enhancers	Right Ventricle	heart
49	chr6:13434000-13436000	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr6:13434200-13434600	Weak transcription	Colonic Mucosa	Colon

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