Variant report

Variant	rs9349797
Chromosome Location	chr6:13799563-13799564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13797361..13801378-chr6:13811915..13815020,5	MCF-7	breast:
2	chr6:13710748..13713652-chr6:13797013..13800432,3	MCF-7	breast:
3	chr6:13798318..13799850-chr6:13805538..13807303,2	K562	blood:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3180196	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66520959	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13781000-13801200	Weak transcription	Psoas Muscle	Psoas
3	chr6:13781000-13802000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13785000-13800800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13785200-13801600	Weak transcription	Gastric	stomach
6	chr6:13785400-13800600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:13786000-13801200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:13787800-13800600	Weak transcription	Brain Anterior Caudate	brain
9	chr6:13787800-13801200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:13788000-13801200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:13788000-13802600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:13788000-13810600	Weak transcription	Fetal Heart	heart
13	chr6:13788000-13810800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
15	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
17	chr6:13788200-13807600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:13788400-13800800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:13788400-13801200	Weak transcription	Esophagus	oesophagus
20	chr6:13788400-13810600	Weak transcription	Colonic Mucosa	Colon
21	chr6:13788600-13810800	Weak transcription	Stomach Mucosa	stomach
22	chr6:13788800-13810600	Weak transcription	Small Intestine	intestine
23	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:13789600-13801000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:13789600-13803800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:13792400-13802600	Weak transcription	Pancreas	Pancrea
28	chr6:13792600-13810800	Weak transcription	Spleen	Spleen
29	chr6:13793000-13813200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:13794000-13800800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:13794000-13801000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:13794400-13800800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:13794600-13800600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:13794600-13800600	Weak transcription	K562	blood
35	chr6:13794800-13812200	Weak transcription	HMEC	breast
36	chr6:13795200-13800600	Weak transcription	A549	lung
37	chr6:13795200-13808200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:13795200-13810800	Weak transcription	NHLF	lung
39	chr6:13795400-13800800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:13795400-13812200	Weak transcription	HUVEC	blood vessel
41	chr6:13795800-13801000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:13795800-13801000	Weak transcription	Fetal Brain Female	brain
43	chr6:13795800-13803000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:13796000-13800400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:13796000-13805600	Weak transcription	NH-A	brain
46	chr6:13796000-13809800	Strong transcription	Dnd41	blood
47	chr6:13796000-13811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:13796200-13800600	Weak transcription	Fetal Brain Male	brain
49	chr6:13796400-13803800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:13796400-13807600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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