Variant report

Variant	rs9350339
Chromosome Location	chr6:21257249-21257250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10946442	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1125074	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11758674	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1459046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2061440	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2125569	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9348462	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9350338	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9350340	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358402	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830600	chr6:21133128-21312355	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21256400-21261600	Enhancers	Dnd41	blood
2	chr6:21256800-21259000	Active TSS	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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