Variant report

Variant	rs9350447
Chromosome Location	chr6:63225697-63225698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1413778	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1413779	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1413784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345982	0.88[ASN][1000 genomes]
rs2782369	0.80[ASN][1000 genomes]
rs2843063	0.80[ASN][1000 genomes]
rs4318855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710359	0.80[ASN][1000 genomes]
rs62414735	0.85[AFR][1000 genomes]
rs62414736	0.85[AFR][1000 genomes]
rs62414740	0.85[AFR][1000 genomes]
rs62414741	0.85[AFR][1000 genomes]
rs62414745	0.85[AFR][1000 genomes]
rs62414746	0.85[AFR][1000 genomes]
rs62416846	0.83[AFR][1000 genomes]
rs62416847	0.83[AFR][1000 genomes]
rs62416848	0.83[AFR][1000 genomes]
rs62418175	0.84[AFR][1000 genomes]
rs62418208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6453554	0.83[AFR][1000 genomes]
rs6453555	0.83[AFR][1000 genomes]
rs6910728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918824	0.83[AFR][1000 genomes]
rs7751345	0.83[AFR][1000 genomes]
rs7752623	0.81[AMR][1000 genomes]
rs7756645	0.83[AFR][1000 genomes]
rs9341355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350443	0.88[ASN][1000 genomes]
rs9350446	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350449	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9351875	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1030631	chr6:63111798-63225697	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv885967	chr6:63152724-63605221	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv885968	chr6:63199731-63585140	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1019784	chr6:63211479-63348695	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv885969	chr6:63223191-63496191	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9350447	KHDRBS2	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63224600-63226400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:63224800-63225800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:63224800-63225800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:63225000-63226000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:63225200-63225800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:63225400-63226200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:63225400-63226800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:63225600-63226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:63225600-63226200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr6:63225600-63226200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:63225600-63226400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:63225600-63226800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:63225600-63227400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links