Variant report

Variant	rs9350827
Chromosome Location	chr6:80488979-80488980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12660740	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4467741	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55671169	0.84[EUR][1000 genomes]
rs59337495	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6921089	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6925255	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6941826	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6942089	0.85[EUR][1000 genomes]
rs714701	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs714702	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs714703	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs714704	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs720808	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768071	0.81[ASN][1000 genomes]
rs926839	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352765	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9361558	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443716	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9448820	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1021143	chr6:80400195-80598163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv886305	chr6:80433732-80495689	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80488200-80495200	Weak transcription	Right Atrium	heart
2	chr6:80488400-80489000	Bivalent Enhancer	HepG2	liver
3	chr6:80488400-80502200	Weak transcription	Fetal Brain Male	brain
4	chr6:80488600-80489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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