Variant report

Variant	rs9350868
Chromosome Location	chr6:81446168-81446169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1339379	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1339381	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1339382	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16892221	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1856523	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1856524	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4607400	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6913090	0.96[ASN][1000 genomes]
rs6921344	0.98[AFR][1000 genomes]
rs9352858	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9359426	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9361645	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886317	chr6:81428336-81536597	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81445600-81446800	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links