Variant report

Variant	rs935138
Chromosome Location	chr17:66774593-66774594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66773289..66774867-chr17:66781256..66783342,2	K562	blood:
2	chr17:66773647..66776231-chr17:67231747..67233386,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12232473	0.89[ASN][1000 genomes]
rs1348372	0.89[ASN][1000 genomes]
rs2120192	0.81[EUR][1000 genomes]
rs4968941	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7217811	0.90[ASN][1000 genomes]
rs72843205	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7502630	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7502934	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs755424	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8081909	0.82[EUR][1000 genomes]
rs9302982	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66778800	Weak transcription	HSMMtube	muscle
2	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:66768800-66774800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr17:66770600-66774800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:66770600-66775000	Enhancers	NHDF-Ad	bronchial
6	chr17:66770600-66776400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:66771000-66774800	Enhancers	NHLF	lung
8	chr17:66771200-66774600	Weak transcription	Placenta	Placenta
9	chr17:66771200-66774800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr17:66771200-66775200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr17:66772600-66774800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr17:66772600-66777000	Enhancers	Fetal Muscle Leg	muscle
13	chr17:66773000-66775000	Enhancers	HUVEC	blood vessel
14	chr17:66773200-66780000	Weak transcription	Ovary	ovary
15	chr17:66773400-66774600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr17:66773400-66774800	Enhancers	Brain Angular Gyrus	brain
17	chr17:66773400-66774800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr17:66773400-66774800	Enhancers	Fetal Stomach	stomach
19	chr17:66773400-66775000	Enhancers	Fetal Lung	lung
20	chr17:66773400-66775200	Enhancers	Brain Substantia Nigra	brain
21	chr17:66773600-66774800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr17:66773800-66774600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr17:66773800-66774600	Active TSS	Duodenum Mucosa	Duodenum
24	chr17:66773800-66774600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr17:66773800-66774800	Flanking Active TSS	Liver	Liver
26	chr17:66773800-66775000	Flanking Active TSS	HepG2	liver
27	chr17:66773800-66775800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr17:66774000-66774600	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr17:66774000-66774600	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr17:66774000-66774800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr17:66774000-66774800	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr17:66774000-66776200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:66774200-66774600	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr17:66774200-66774600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr17:66774200-66774800	Enhancers	Colonic Mucosa	Colon
36	chr17:66774200-66774800	Enhancers	Psoas Muscle	Psoas
37	chr17:66774200-66775000	Enhancers	Brain Anterior Caudate	brain
38	chr17:66774200-66778800	Weak transcription	Colon Smooth Muscle	Colon
39	chr17:66774400-66774600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:66774400-66774600	Active TSS	Stomach Mucosa	stomach
41	chr17:66774400-66774800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr17:66774400-66774800	Enhancers	Gastric	stomach
43	chr17:66774400-66774800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr17:66774400-66774800	Enhancers	Spleen	Spleen
45	chr17:66774400-66775000	Enhancers	Adipose Nuclei	Adipose
46	chr17:66774400-66775000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr17:66774400-66775000	Enhancers	Right Atrium	heart
48	chr17:66774400-66775600	Enhancers	Brain Hippocampus Middle	brain
49	chr17:66774400-66778400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr17:66774400-66779000	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links