Variant report

Variant	rs9352507
Chromosome Location	chr6:78359807-78359808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9341678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341680	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361258	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361259	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886225	chr6:78269161-78378014	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv521951	chr6:78277775-78361170	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv463167	chr6:78277775-78361170	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv603810	chr6:78277775-78361170	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv463168	chr6:78317850-78361170	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv603811	chr6:78317850-78361170	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1031368	chr6:78335896-78503051	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv603812	chr6:78336806-78646748	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv2758063	chr6:78336955-78580830	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759446	chr6:78336955-78580830	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1016961	chr6:78352231-79003866	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv538326	chr6:78352231-79003866	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv949682	chr6:78355600-79002515	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78355000-78362400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:78359200-78360200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:78359200-78360200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:78359200-78360400	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:78359400-78360200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:78359400-78360200	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:78359400-78360200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:78359400-78360200	Active TSS	Primary hematopoietic stem cells	blood
9	chr6:78359400-78360200	Active TSS	Fetal Kidney	kidney
10	chr6:78359400-78360400	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:78359400-78360400	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:78359600-78360000	Enhancers	Fetal Lung	lung
13	chr6:78359600-78360200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:78359600-78360200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:78359600-78360200	Active TSS	Primary B cells from cord blood	blood
16	chr6:78359600-78360200	Active TSS	Primary T cells from cord blood	blood
17	chr6:78359600-78360200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:78359600-78360200	Active TSS	Aorta	Aorta
19	chr6:78359600-78360200	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:78359600-78360200	Active TSS	Fetal Intestine Large	intestine
21	chr6:78359600-78360200	Active TSS	NHEK	skin
22	chr6:78359600-78360400	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr6:78359600-78360400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr6:78359600-78360400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr6:78359600-78360400	Active TSS	Right Ventricle	heart
26	chr6:78359600-78360600	Active TSS	Brain Hippocampus Middle	brain
27	chr6:78359600-78360600	Active TSS	Right Atrium	heart
28	chr6:78359800-78360000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:78359800-78360000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr6:78359800-78360000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:78359800-78360000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:78359800-78360000	Active TSS	Fetal Muscle Trunk	muscle
33	chr6:78359800-78360000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
34	chr6:78359800-78360000	Active TSS	Stomach Smooth Muscle	stomach
35	chr6:78359800-78360000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
36	chr6:78359800-78360200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:78359800-78360200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:78359800-78360200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:78359800-78360200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr6:78359800-78360200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:78359800-78360200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:78359800-78360200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:78359800-78360200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:78359800-78360200	Active TSS	Liver	Liver
45	chr6:78359800-78360200	Active TSS	Brain Anterior Caudate	brain
46	chr6:78359800-78360200	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr6:78359800-78360200	Flanking Active TSS	Placenta	Placenta
48	chr6:78359800-78360200	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr6:78359800-78360200	Active TSS	Fetal Thymus	thymus
50	chr6:78359800-78360200	Active TSS	Left Ventricle	heart

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