Variant report

Variant	rs935325
Chromosome Location	chr15:57565780-57565781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57564291..57566333-chr15:57603914..57606752,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2431022	0.90[AFR][1000 genomes]
rs2431031	0.90[AFR][1000 genomes]
rs3095822	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
3	chr15:57526600-57574200	Weak transcription	Hela-S3	cervix
4	chr15:57533600-57568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:57536800-57574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
7	chr15:57539400-57574800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:57544600-57574800	Weak transcription	Fetal Brain Male	brain
9	chr15:57546000-57580600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:57548200-57578000	Weak transcription	Fetal Heart	heart
11	chr15:57552000-57565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:57552200-57573200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:57552200-57588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:57552400-57578600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:57553200-57585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:57554200-57568800	Strong transcription	Primary T cells from cord blood	blood
17	chr15:57556200-57580600	Weak transcription	Stomach Mucosa	stomach
18	chr15:57557000-57584600	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:57557600-57578000	Weak transcription	Pancreas	Pancrea
20	chr15:57557600-57588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:57558200-57573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:57562400-57567800	Strong transcription	Fetal Intestine Large	intestine
23	chr15:57562400-57568600	Strong transcription	Primary hematopoietic stem cells	blood
24	chr15:57562600-57569400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:57562600-57575600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:57562600-57578000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:57562600-57584200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr15:57562600-57584600	Strong transcription	Fetal Muscle Leg	muscle
29	chr15:57563200-57572000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:57563400-57568600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:57563400-57569600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr15:57563800-57568600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:57563800-57568600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:57564000-57582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:57564000-57583600	Strong transcription	Dnd41	blood
36	chr15:57564200-57568400	Strong transcription	Primary B cells from cord blood	blood
37	chr15:57564200-57568800	Strong transcription	K562	blood
38	chr15:57564400-57566400	Strong transcription	GM12878-XiMat	blood
39	chr15:57564400-57568000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr15:57564400-57568400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:57564400-57568600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:57564400-57568600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:57564400-57568800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:57564400-57568800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:57564400-57569400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:57564600-57568400	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:57564600-57568600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:57564600-57568600	Strong transcription	NH-A	brain
49	chr15:57564600-57568800	Strong transcription	Liver	Liver
50	chr15:57564800-57566200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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