Variant report

Variant	rs9353834
Chromosome Location	chr6:92147358-92147359
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs714913	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7759447	0.81[ASN][1000 genomes]
rs9294504	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9342279	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv830727	chr6:91988380-92155581	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92145400-92148000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:92145600-92148400	Weak transcription	Fetal Kidney	kidney
3	chr6:92146200-92149200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:92146400-92147400	Enhancers	Fetal Stomach	stomach
5	chr6:92146400-92147800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:92146400-92147800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:92146600-92147800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:92146600-92147800	Enhancers	Fetal Lung	lung
9	chr6:92146600-92148000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:92146800-92147400	Enhancers	Brain Hippocampus Middle	brain
11	chr6:92146800-92147600	Enhancers	Brain Germinal Matrix	brain
12	chr6:92146800-92147800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:92147000-92147400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:92147000-92147600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:92147000-92147600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:92147000-92147800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:92147000-92147800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:92147000-92147800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:92147000-92148000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:92147000-92148200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:92147000-92148400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:92147000-92148600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:92147200-92147800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:92147200-92149800	Enhancers	HUVEC	blood vessel

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