Variant report

Variant	rs9353840
Chromosome Location	chr6:92185518-92185519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10806444	0.99[ASN][1000 genomes]
rs2249927	0.93[ASN][1000 genomes]
rs2655640	0.94[ASN][1000 genomes]
rs2655647	0.94[ASN][1000 genomes]
rs2748283	0.90[ASN][1000 genomes]
rs2748285	0.92[ASN][1000 genomes]
rs2818290	0.93[ASN][1000 genomes]
rs3924965	0.94[ASN][1000 genomes]
rs4142617	0.99[ASN][1000 genomes]
rs4142618	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4142619	0.98[ASN][1000 genomes]
rs4142620	0.98[ASN][1000 genomes]
rs4142624	0.98[ASN][1000 genomes]
rs4235848	0.99[ASN][1000 genomes]
rs4262163	0.97[ASN][1000 genomes]
rs4277986	0.97[ASN][1000 genomes]
rs4291077	0.97[ASN][1000 genomes]
rs4321804	0.97[ASN][1000 genomes]
rs4419648	0.94[ASN][1000 genomes]
rs4490641	0.98[ASN][1000 genomes]
rs4557492	0.98[ASN][1000 genomes]
rs4707673	0.97[ASN][1000 genomes]
rs4707674	0.95[ASN][1000 genomes]
rs6918030	0.99[ASN][1000 genomes]
rs6918571	0.98[ASN][1000 genomes]
rs7757034	0.94[ASN][1000 genomes]
rs7767518	0.98[ASN][1000 genomes]
rs9283811	0.98[ASN][1000 genomes]
rs9294497	0.94[ASN][1000 genomes]
rs9294500	0.94[ASN][1000 genomes]
rs9294501	0.97[ASN][1000 genomes]
rs9294502	0.98[ASN][1000 genomes]
rs9294503	0.98[ASN][1000 genomes]
rs9345138	0.98[ASN][1000 genomes]
rs9353835	0.94[ASN][1000 genomes]
rs9353841	0.94[ASN][1000 genomes]
rs9362875	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024381	chr6:92169962-92194575	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92183200-92185600	Weak transcription	GM12878-XiMat	blood
2	chr6:92184600-92185600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:92184800-92185800	Weak transcription	Aorta	Aorta
4	chr6:92185000-92185600	Active TSS	Brain Anterior Caudate	brain
5	chr6:92185400-92186000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:92185400-92186000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr6:92185400-92186200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:92185400-92186200	Enhancers	Dnd41	blood
9	chr6:92185400-92186400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:92185400-92186400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:92185400-92186800	Enhancers	HUVEC	blood vessel

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