Variant report

Variant	rs9353948
Chromosome Location	chr6:93568083-93568084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:93560832..93563328-chr6:93567329..93569534,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455537	0.82[AMR][1000 genomes]
rs10455538	0.82[AMR][1000 genomes]
rs10455539	0.80[AMR][1000 genomes]
rs1399950	0.84[AMR][1000 genomes]
rs1399951	0.84[AMR][1000 genomes]
rs1515795	0.82[AMR][1000 genomes]
rs1515797	0.81[AMR][1000 genomes]
rs2325464	0.83[AMR][1000 genomes]
rs2325465	0.82[AMR][1000 genomes]
rs4235854	0.84[AMR][1000 genomes]
rs4706426	0.84[AMR][1000 genomes]
rs6901255	0.84[AMR][1000 genomes]
rs6928593	0.82[AMR][1000 genomes]
rs7382779	0.82[AMR][1000 genomes]
rs7760258	0.82[AMR][1000 genomes]
rs868805	0.82[AMR][1000 genomes]
rs868806	0.84[AMR][1000 genomes]
rs9345280	0.84[AMR][1000 genomes]
rs9345281	0.84[AMR][1000 genomes]
rs9345282	0.82[AMR][1000 genomes]
rs9345283	0.86[AMR][1000 genomes]
rs9351331	0.84[AMR][1000 genomes]
rs9351332	0.82[AMR][1000 genomes]
rs9353944	0.84[AMR][1000 genomes]
rs9363005	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951554	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1031496	chr6:93365937-93715883	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv428150	chr6:93409468-93587278	Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv463960	chr6:93512325-93570432	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604149	chr6:93512325-93570432	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv470842	chr6:93530757-93615450	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv604150	chr6:93531024-93607693	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv463961	chr6:93543278-93607693	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv604151	chr6:93543278-93607693	Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2754317	chr6:93552479-93995479	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	esv1846588	chr6:93561150-93722247	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv463963	chr6:93563593-93575330	Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv604152	chr6:93563593-93575330	Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv463964	chr6:93564260-93575330	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604153	chr6:93564260-93575330	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv463965	chr6:93564260-93576022	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv604154	chr6:93564260-93576022	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93568000-93568600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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