Variant report

Variant	rs9354951
Chromosome Location	chr6:71707973-71707974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2347634	0.83[EUR][1000 genomes]
rs2347636	0.81[EUR][1000 genomes]
rs2682184	0.94[ASN][1000 genomes]
rs2881683	0.83[EUR][1000 genomes]
rs2881764	0.82[EUR][1000 genomes]
rs36149468	0.83[EUR][1000 genomes]
rs4140440	0.82[EUR][1000 genomes]
rs4547975	0.82[EUR][1000 genomes]
rs4706473	0.83[EUR][1000 genomes]
rs4706474	0.83[EUR][1000 genomes]
rs4707877	0.82[EUR][1000 genomes]
rs6905469	0.82[EUR][1000 genomes]
rs6927406	0.83[EUR][1000 genomes]
rs6927809	0.82[EUR][1000 genomes]
rs7752850	0.81[EUR][1000 genomes]
rs7769614	0.83[EUR][1000 genomes]
rs7770009	0.81[EUR][1000 genomes]
rs9346411	0.82[EUR][1000 genomes]
rs9346414	0.81[EUR][1000 genomes]
rs9351797	0.83[EUR][1000 genomes]
rs9354950	0.81[EUR][1000 genomes]
rs9354955	0.82[EUR][1000 genomes]
rs9364115	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966627	chr6:71699692-71726851	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71695600-71716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:71707200-71708200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:71707600-71708200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71707600-71708400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:71707600-71708600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:71707800-71708200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:71707800-71708200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:71707800-71708200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:71707800-71708400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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