Variant report

Variant	rs9355592
Chromosome Location	chr6:167171618-167171619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr6:167171193-167171842	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr6:167171520-167171670	AG09309	skin:	n/a	n/a

Variant related genes	Relation type
RPS6KA2	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1202672	0.81[ASN][1000 genomes]
rs12524894	1.00[CEU][hapmap]
rs1964808	0.81[ASN][1000 genomes]
rs491700	0.93[CHD][hapmap];0.80[ASN][1000 genomes]
rs656938	0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs9347153	1.00[CEU][hapmap]
rs9347154	1.00[CEU][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs9347155	1.00[CEU][hapmap]
rs9348179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167168800-167180400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:167170400-167172000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:167170400-167174200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:167170400-167174200	Enhancers	Thymus	Thymus
5	chr6:167170600-167171800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr6:167170600-167171800	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr6:167170600-167172000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:167170600-167172000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:167170600-167172000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr6:167170600-167172200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:167170600-167172200	Bivalent Enhancer	Fetal Heart	heart
12	chr6:167170600-167172400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:167170600-167174600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:167170800-167171800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:167170800-167171800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:167170800-167171800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr6:167170800-167171800	Bivalent Enhancer	HSMM	muscle
18	chr6:167170800-167172000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr6:167170800-167172000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:167170800-167172000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:167170800-167172000	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:167170800-167172000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr6:167170800-167172000	Enhancers	Lung	lung
24	chr6:167170800-167172000	Flanking Active TSS	NHEK	skin
25	chr6:167170800-167172200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:167170800-167172400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:167170800-167172400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:167170800-167172400	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:167170800-167172400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:167170800-167172400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:167170800-167172600	Bivalent Enhancer	Fetal Brain Male	brain
32	chr6:167170800-167172600	Bivalent Enhancer	Fetal Lung	lung
33	chr6:167170800-167173600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:167171000-167171800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:167171000-167171800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:167171000-167171800	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr6:167171000-167171800	Bivalent Enhancer	Placenta	Placenta
38	chr6:167171000-167171800	Active TSS	Ovary	ovary
39	chr6:167171000-167171800	Enhancers	Placenta Amnion	Placenta Amnion
40	chr6:167171000-167172000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr6:167171000-167172000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:167171000-167172000	Enhancers	Brain Germinal Matrix	brain
43	chr6:167171000-167172200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:167171000-167172600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:167171200-167171800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr6:167171200-167171800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:167171200-167171800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr6:167171200-167171800	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr6:167171200-167171800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
50	chr6:167171200-167172000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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