Variant report

Variant	rs9356243
Chromosome Location	chr6:165111772-165111773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1390466	0.93[ASN][1000 genomes]
rs1390467	0.93[ASN][1000 genomes]
rs4235949	0.90[ASN][1000 genomes]
rs4709880	0.88[ASN][1000 genomes]
rs4709892	0.84[EUR][1000 genomes]
rs903791	0.89[ASN][1000 genomes]
rs9459178	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830861	chr6:165014475-165231204	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv525815	chr6:165017873-165262895	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605234	chr6:165054409-165130872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165108600-165113800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:165111200-165111800	Enhancers	Brain Germinal Matrix	brain
3	chr6:165111200-165111800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:165111200-165112200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:165111200-165112600	Enhancers	Brain Anterior Caudate	brain
6	chr6:165111200-165112600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:165111200-165112800	Enhancers	Brain Substantia Nigra	brain
8	chr6:165111200-165113400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:165111200-165117600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:165111400-165111800	Enhancers	Brain Hippocampus Middle	brain
11	chr6:165111400-165112200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:165111400-165112200	Enhancers	Brain Angular Gyrus	brain
13	chr6:165111400-165115000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:165111600-165112200	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr6:165111600-165112200	Enhancers	Fetal Brain Male	brain
16	chr6:165111600-165112200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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