Variant report

Variant	rs9356444
Chromosome Location	chr6:166648456-166648457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10946140	0.81[AMR][1000 genomes]
rs1884959	0.81[AMR][1000 genomes]
rs2064880	0.86[AMR][1000 genomes]
rs6900299	0.82[AMR][1000 genomes]
rs9365973	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166643200-166649200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:166643800-166650000	Weak transcription	Fetal Thymus	thymus
3	chr6:166645800-166648800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:166646400-166650200	Weak transcription	Dnd41	blood
5	chr6:166646800-166650400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:166648200-166649000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:166648400-166649000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:166648400-166649400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:166648400-166649600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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