Variant report

Variant	rs9356479
Chromosome Location	chr6:166755480-166755481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166751804..166757558-chr6:166793969..166799153,5	K562	blood:
2	chr6:166754173..166757774-chr6:166795355..166798060,3	MCF-7	breast:
3	chr6:166753320..166757958-chr6:166794622..166799153,8	K562	blood:

Variant related genes	Relation type
ENSG00000060762	Chromatin interaction
ENSG00000261420	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10806847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10862	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11168	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2343590	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4470829	0.90[ASN][1000 genomes]
rs4598048	0.88[ASN][1000 genomes]
rs4709112	0.88[AMR][1000 genomes]
rs4710041	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6909951	0.88[AMR][1000 genomes]
rs6918901	0.82[AMR][1000 genomes]
rs6927168	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7757549	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9356476	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9356478	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9366005	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9366006	0.85[AMR][1000 genomes]
rs9366007	0.85[AMR][1000 genomes]
rs9459654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166753400-166755800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
2	chr6:166754600-166755600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:166754600-166756600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:166754600-166756600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:166754600-166756800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:166754600-166756800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:166754600-166756800	Active TSS	GM12878-XiMat	blood
8	chr6:166754800-166755600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:166754800-166755600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr6:166754800-166755600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:166754800-166755600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:166754800-166755600	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr6:166754800-166755600	Flanking Active TSS	Fetal Muscle Leg	muscle
14	chr6:166754800-166755800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:166754800-166756200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:166754800-166756400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:166754800-166756600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:166754800-166756600	Active TSS	Hela-S3	cervix
19	chr6:166754800-166757000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr6:166754800-166757000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:166754800-166757000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:166754800-166757000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:166754800-166757000	Active TSS	Colonic Mucosa	Colon
24	chr6:166754800-166757200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:166755000-166755600	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr6:166755000-166755600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr6:166755000-166755600	Flanking Active TSS	Liver	Liver
28	chr6:166755000-166755600	Flanking Active TSS	Fetal Brain Male	brain
29	chr6:166755000-166755600	Flanking Active TSS	Fetal Brain Female	brain
30	chr6:166755000-166755600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr6:166755000-166755600	Flanking Active TSS	HUVEC	blood vessel
32	chr6:166755000-166755800	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr6:166755000-166755800	Active TSS	Right Atrium	heart
34	chr6:166755000-166756200	Active TSS	Primary T cells fromperipheralblood	blood
35	chr6:166755000-166756200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:166755000-166756200	Active TSS	Fetal Muscle Trunk	muscle
37	chr6:166755000-166756400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:166755000-166756600	Active TSS	Aorta	Aorta
39	chr6:166755000-166756600	Active TSS	Brain Substantia Nigra	brain
40	chr6:166755000-166756800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:166755000-166756800	Active TSS	H9 Cell Line	embryonic stem cell
42	chr6:166755000-166756800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:166755000-166756800	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr6:166755000-166756800	Active TSS	Lung	lung
45	chr6:166755000-166756800	Active TSS	Ovary	ovary
46	chr6:166755000-166756800	Active TSS	Rectal Smooth Muscle	rectum
47	chr6:166755000-166756800	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr6:166755000-166756800	Active TSS	NHDF-Ad	bronchial
49	chr6:166755000-166757000	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr6:166755000-166757000	Active TSS	H1 Cell Line	embryonic stem cell

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