Variant report

Variant	rs9356531
Chromosome Location	chr6:167276965-167276966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:167276965-167277165	MCF10A-Er-Src	breast:	n/a	n/a
2	CTCF	chr6:167276820-167276970	HRE	kidney:	n/a	n/a

Variant related genes	Relation type
RPS6KA2	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12202379	0.92[EUR][1000 genomes]
rs12216339	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1536641	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4710121	0.90[CEU][hapmap]
rs9348198	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs9355601	0.90[CEU][hapmap]
rs9356529	0.85[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv605327	chr6:167185674-167360389	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1027314	chr6:167194653-167355961	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv538542	chr6:167194653-167355961	Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv605332	chr6:167198027-167353701	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
13	nsv605333	chr6:167201033-167321693	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1016940	chr6:167222633-167289747	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv886942	chr6:167245665-167282950	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167273800-167277000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:167275000-167277000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:167275200-167277000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:167275400-167277000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:167275600-167277000	Active TSS	Colon Smooth Muscle	Colon
6	chr6:167276200-167277000	Enhancers	Fetal Brain Male	brain
7	chr6:167276200-167277000	Bivalent Enhancer	Stomach Mucosa	stomach
8	chr6:167276600-167277000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr6:167276600-167277000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:167276600-167277000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr6:167276600-167277000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr6:167276600-167277000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:167276600-167277000	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr6:167276600-167277000	Bivalent Enhancer	Fetal Thymus	thymus
15	chr6:167276800-167277000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:167276800-167277000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:167276800-167277000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:167276800-167277000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr6:167276800-167277000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:167276800-167277000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
21	chr6:167276800-167277000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
22	chr6:167276800-167277000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:167276800-167277000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr6:167276800-167277000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:167276800-167277000	Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr6:167276800-167277000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:167276800-167277000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
28	chr6:167276800-167277000	Enhancers	Brain Germinal Matrix	brain
29	chr6:167276800-167277000	Enhancers	Brain Substantia Nigra	brain
30	chr6:167276800-167277000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr6:167276800-167277000	Bivalent Enhancer	Fetal Brain Female	brain
32	chr6:167276800-167277000	Bivalent Enhancer	Fetal Intestine Small	intestine
33	chr6:167276800-167277000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr6:167276800-167277000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
35	chr6:167276800-167277000	Active TSS	Stomach Smooth Muscle	stomach
36	chr6:167276800-167277000	Flanking Active TSS	GM12878-XiMat	blood
37	chr6:167276800-167277000	Bivalent Enhancer	HepG2	liver
38	chr6:167276800-167277600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr6:167276800-167280400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:167276800-167287200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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