Variant report
| Variant | rs9357070 |
|---|---|
| Chromosome Location | chr6:28580121-28580122 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28563594..28565340-chr6:28579660..28581510,2 | K562 | blood: | |
| 2 | chr6:28579345..28581830-chr6:28688286..28691469,3 | K562 | blood: | |
| 3 | chr6:28579737..28581726-chr6:28636928..28639607,2 | K562 | blood: | |
| 4 | chr6:28579298..28581830-chr6:28687615..28690190,2 | K562 | blood: | |
| 5 | chr6:28579846..28585618-chr6:28609150..28616432,10 | K562 | blood: | |
| 6 | chr6:28457570..28459445-chr6:28579762..28581303,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272278 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11965972 | 0.83[EUR][1000 genomes] |
| rs11970409 | 0.82[EUR][1000 genomes] |
| rs13220637 | 0.82[EUR][1000 genomes] |
| rs2394122 | 0.84[ASN][1000 genomes] |
| rs34556183 | 0.84[EUR][1000 genomes] |
| rs36069097 | 0.81[EUR][1000 genomes] |
| rs36103239 | 0.84[EUR][1000 genomes] |
| rs410106 | 0.88[ASN][1000 genomes] |
| rs414745 | 0.86[ASN][1000 genomes] |
| rs418092 | 0.86[ASN][1000 genomes] |
| rs418204 | 0.83[ASN][1000 genomes] |
| rs418914 | 0.89[ASN][1000 genomes] |
| rs425615 | 0.85[ASN][1000 genomes] |
| rs442439 | 0.97[ASN][1000 genomes] |
| rs7741058 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020689 | chr6:28449137-28635171 | Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv830621 | chr6:28473951-28675709 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031671 | chr6:28575172-28678126 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv970735 | chr6:28575590-28581635 | Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv969369 | chr6:28578765-28581635 | Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9357070 | BTN3A2///BTN3A3 | Cis_chr | lymphoblastoid | RTeQTL |
| rs9357070 | BTN3A2 | Cis_chr | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28578800-28580400 | Transcr. at gene 5' and 3' | K562 | blood |
