Variant report

Variant	rs9357093
Chromosome Location	chr6:11228185-11228186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11144154..11146594-chr6:11228087..11231091,3	MCF-7	breast:
2	chr6:11206157..11210739-chr6:11227507..11231085,4	MCF-7	breast:
3	chr6:11225343..11228525-chr6:11231465..11233868,3	K562	blood:
4	chr6:11211756..11214588-chr6:11226503..11228264,2	MCF-7	breast:
5	chr6:11227633..11230379-chr6:11430461..11433425,2	MCF-7	breast:
6	chr6:11227854..11232586-chr6:11280753..11285913,6	MCF-7	breast:
7	chr6:11225705..11228439-chr6:11244238..11247229,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4713284	0.81[EUR][1000 genomes]
rs9295828	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348836	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11211600-11229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11211800-11229200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:11215400-11232000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:11216200-11228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:11216400-11229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:11216600-11228800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:11216600-11229000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:11216600-11231800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:11217800-11229400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:11219200-11228800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:11220000-11228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11220000-11229200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:11220000-11230800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:11220600-11229400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:11220800-11228800	Weak transcription	Fetal Intestine Large	intestine
16	chr6:11220800-11229200	Weak transcription	Fetal Intestine Small	intestine
17	chr6:11221000-11228800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:11221000-11229200	Enhancers	Fetal Brain Male	brain
19	chr6:11221000-11229400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:11221200-11229600	Weak transcription	HSMM	muscle
21	chr6:11222200-11229000	Weak transcription	Fetal Stomach	stomach
22	chr6:11222800-11229200	Weak transcription	Brain Germinal Matrix	brain
23	chr6:11223200-11230600	Transcr. at gene 5' and 3'	HepG2	liver
24	chr6:11223400-11228200	Weak transcription	Colonic Mucosa	Colon
25	chr6:11223400-11229200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:11223400-11232000	Weak transcription	Pancreas	Pancrea
27	chr6:11224200-11228800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:11224200-11229200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:11224800-11228800	Weak transcription	HMEC	breast
30	chr6:11224800-11229200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:11225000-11228600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:11225000-11229200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:11225000-11229200	Weak transcription	Ovary	ovary
34	chr6:11225000-11229800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:11225200-11228800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:11225200-11229000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:11225200-11229000	Enhancers	HUVEC	blood vessel
38	chr6:11225200-11229200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:11225200-11231600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:11225200-11232200	Weak transcription	Gastric	stomach
41	chr6:11225400-11228400	Weak transcription	Placenta	Placenta
42	chr6:11225400-11229200	Weak transcription	NHEK	skin
43	chr6:11225400-11229400	Weak transcription	Fetal Thymus	thymus
44	chr6:11225400-11229400	Weak transcription	HSMMtube	muscle
45	chr6:11225400-11232200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:11225600-11228800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:11225600-11230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:11225600-11230600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:11225600-11231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:11225800-11229200	Weak transcription	Duodenum Mucosa	Duodenum

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