Variant report

Variant	rs9357727
Chromosome Location	chr6:13430655-13430656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13426718..13428428-chr6:13429369..13431705,2	K562	blood:
2	chr6:13426005..13428428-chr6:13430205..13432759,2	K562	blood:
3	chr6:13430517..13435196-chr6:13435654..13440896,5	K562	blood:
4	chr6:13428050..13431790-chr6:13485555..13488109,3	MCF-7	breast:
5	chr6:13423766..13425699-chr6:13428540..13431249,2	K562	blood:

Variant related genes	Relation type
ENSG00000237786	Chromatin interaction
ENSG00000187461	Chromatin interaction
ENSG00000145990	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1550520	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1550521	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2119481	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2165419	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2327674	0.92[ASN][1000 genomes]
rs4715295	0.91[ASN][1000 genomes]
rs6458814	0.84[EUR][1000 genomes]
rs6458815	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6910652	0.84[EUR][1000 genomes]
rs9370104	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9382080	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9395768	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9395770	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13422200-13432800	Weak transcription	NHDF-Ad	bronchial
2	chr6:13423400-13432200	Weak transcription	A549	lung
3	chr6:13423800-13431400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:13423800-13431400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:13423800-13433000	Weak transcription	Pancreas	Pancrea
6	chr6:13425200-13431200	Enhancers	Left Ventricle	heart
7	chr6:13425200-13432200	Enhancers	Right Ventricle	heart
8	chr6:13426600-13431200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:13426800-13431600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:13426800-13431600	Weak transcription	NHLF	lung
11	chr6:13426800-13431800	Weak transcription	NH-A	brain
12	chr6:13427000-13432000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:13427000-13432800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:13427800-13432200	Weak transcription	Liver	Liver
15	chr6:13428200-13431800	Weak transcription	Adipose Nuclei	Adipose
16	chr6:13428400-13431000	Enhancers	Spleen	Spleen
17	chr6:13428400-13432800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:13428600-13434400	Enhancers	Right Atrium	heart
19	chr6:13428800-13451200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:13429000-13431600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:13429000-13434000	Weak transcription	Colonic Mucosa	Colon
22	chr6:13429000-13436000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:13429200-13433200	Weak transcription	Primary B cells from cord blood	blood
24	chr6:13429200-13436200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:13429400-13431800	Weak transcription	Fetal Brain Female	brain
26	chr6:13429400-13432200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:13429400-13432600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:13429400-13434600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:13429600-13430800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:13429600-13431600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:13429600-13432600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:13429600-13432600	Weak transcription	Placenta	Placenta
33	chr6:13429600-13432800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:13429600-13434200	Enhancers	Primary T cells from cord blood	blood
35	chr6:13429600-13435400	Weak transcription	Small Intestine	intestine
36	chr6:13429800-13430800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:13429800-13430800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:13429800-13430800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:13429800-13430800	Weak transcription	Psoas Muscle	Psoas
40	chr6:13429800-13431000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:13429800-13431000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:13429800-13431000	Weak transcription	Brain Substantia Nigra	brain
43	chr6:13429800-13431200	Weak transcription	Brain Anterior Caudate	brain
44	chr6:13429800-13431400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:13429800-13431400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:13429800-13431600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:13429800-13431600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:13429800-13431600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:13429800-13431600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:13429800-13431600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links