Variant report

Variant	rs9357770
Chromosome Location	chr6:13572442-13572443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:13571397-13575713	GM12891	blood:	n/a	n/a
2	POLR2A	chr6:13571433-13573078	K562	blood:	n/a	n/a
3	POLR2A	chr6:13572123-13572550	HCT-116	colon:	n/a	n/a
4	POLR2A	chr6:13571537-13573248	HepG2	liver:	n/a	n/a
5	POLR2A	chr6:13571237-13575938	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr6:13571324-13573431	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:13572425-13572851	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr6:13571477-13576346	MCF10A-Er-Src	breast:	n/a	n/a
9	SPI1	chr6:13572408-13572811	HL-60	blood:	n/a	chr6:13572622-13572635 chr6:13572625-13572634 chr6:13572623-13572636
10	POLR2A	chr6:13571250-13574366	SK-N-MC	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:46821773..46824180-chr6:13571587..13574488,2	MCF-7	breast:
2	chr6:13562426..13565050-chr6:13570346..13572936,3	MCF-7	breast:
3	chr6:13484393..13490113-chr6:13572102..13578017,14	MCF-7	breast:
4	chr6:13571943..13574615-chr6:13703735..13706256,3	K562	blood:
5	chr6:13571943..13574615-chr6:13703735..13705553,2	K562	blood:
6	chr6:13471106..13473285-chr6:13571485..13573042,2	K562	blood:
7	chr6:13571919..13573571-chr6:13626194..13627937,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RANBP9-2	chr6:13572305-13574446	NONHSAT107810

No data

Variant related genes	Relation type
SIRT5	TF binding region
ENSG00000145990	Chromatin interaction
ENSG00000237786	Chromatin interaction
ENSG00000187461	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12154064	1.00[AMR][1000 genomes]
rs2841556	1.00[GIH][hapmap]
rs62387399	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13560400-13573800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:13562800-13573600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13567000-13573000	Weak transcription	K562	blood
4	chr6:13568200-13573400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:13569000-13573400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:13569000-13573600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:13570200-13573600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:13570200-13573800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:13570400-13573200	Weak transcription	HepG2	liver
10	chr6:13570400-13573800	Weak transcription	Spleen	Spleen
11	chr6:13570600-13573600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:13570600-13573800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:13570800-13573600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:13571000-13572800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:13571000-13573600	Weak transcription	Fetal Stomach	stomach
16	chr6:13571200-13572600	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:13571200-13573600	Weak transcription	HSMM	muscle
18	chr6:13571800-13573400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:13571800-13573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:13571800-13573600	Weak transcription	Lung	lung
21	chr6:13571800-13573800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:13572000-13573400	Weak transcription	A549	lung
23	chr6:13572000-13573600	Weak transcription	Colonic Mucosa	Colon
24	chr6:13572000-13573800	Weak transcription	Primary B cells from cord blood	blood
25	chr6:13572000-13573800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:13572200-13573600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:13572400-13573200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:13572400-13573600	Enhancers	Liver	Liver

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