Variant report

Variant	rs9358767
Chromosome Location	chr6:24445829-24445830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24444100..24446602-chr6:24457686..24459822,2	K562	blood:
2	chr6:24438222..24440221-chr6:24443252..24446225,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12055519	0.87[CEU][hapmap];0.91[CHB][hapmap]
rs1321820	0.95[CHB][hapmap]
rs2273605	0.87[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap]
rs2295649	1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298062	0.94[CHB][hapmap]
rs2744565	0.84[ASN][1000 genomes]
rs2793430	0.82[ASN][1000 genomes]
rs2793431	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2793437	0.83[ASN][1000 genomes]
rs3761789	0.81[EUR][1000 genomes]
rs6942189	0.87[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap]
rs7755403	0.84[ASN][1000 genomes]
rs793672	0.81[CHB][hapmap]
rs9348637	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393555	0.81[EUR][1000 genomes]
rs9393556	0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9393557	0.82[ASN][1000 genomes]
rs9393558	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs9358767	FAM65B	cis	lymphoblastoid	seeQTL
rs9358767	HIST1H1C	cis	cerebellum	SCAN
rs9358767	HIST1H2BG	cis	parietal	SCAN
rs9358767	HIST1H4E	cis	parietal	SCAN
rs9358767	HIST1H3A	cis	cerebellum	SCAN
rs9358767	HIST1H2BA	cis	cerebellum	SCAN
rs9358767	HIST1H2BC	cis	parietal	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24417400-24451800	Strong transcription	Liver	Liver
2	chr6:24421200-24448800	Weak transcription	Gastric	stomach
3	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
4	chr6:24424000-24456600	Weak transcription	Ovary	ovary
5	chr6:24426200-24446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:24426400-24446000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:24427600-24456800	Weak transcription	Lung	lung
8	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
13	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:24429600-24455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:24430800-24448400	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:24433600-24451600	Weak transcription	Adipose Nuclei	Adipose
18	chr6:24437600-24455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:24437800-24450600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
21	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
22	chr6:24438200-24447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:24438200-24455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:24438400-24448600	Weak transcription	Right Ventricle	heart
25	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
27	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:24440400-24452000	Weak transcription	Primary T cells from cord blood	blood
29	chr6:24441400-24452000	Weak transcription	Thymus	Thymus
30	chr6:24442000-24448000	Weak transcription	K562	blood
31	chr6:24442000-24452000	Weak transcription	Fetal Thymus	thymus
32	chr6:24444000-24449200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:24444000-24458200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:24444200-24446000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:24445000-24447400	Strong transcription	Brain Anterior Caudate	brain
36	chr6:24445400-24447200	Strong transcription	Aorta	Aorta
37	chr6:24445400-24448400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr6:24445600-24446000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr6:24445600-24446400	Enhancers	H9 Cell Line	embryonic stem cell
40	chr6:24445600-24446400	Strong transcription	Fetal Brain Female	brain
41	chr6:24445600-24448800	Strong transcription	Fetal Muscle Leg	muscle
42	chr6:24445800-24446000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr6:24445800-24446400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:24445800-24446400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:24445800-24446400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:24445800-24446600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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