Variant report

Variant	rs9358852
Chromosome Location	chr6:25313863-25313864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25298383..25300116-chr6:25311036..25313925,3	MCF-7	breast:
2	chr6:25278102..25281759-chr6:25312379..25314512,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079691	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2690047	1.00[CEU][hapmap]
rs2690056	1.00[CEU][hapmap]
rs2744273	1.00[CEU][hapmap]
rs2744274	1.00[CEU][hapmap]
rs6913606	1.00[CEU][hapmap]
rs6913886	1.00[CEU][hapmap]
rs6936496	1.00[CEU][hapmap]
rs6939174	1.00[CEU][hapmap]
rs7755701	1.00[CEU][hapmap]
rs7756143	1.00[CEU][hapmap]
rs9366616	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv16338	chr6:25312436-25315638	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25303200-25314800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:25303400-25315400	Weak transcription	Fetal Kidney	kidney
3	chr6:25305000-25324400	Weak transcription	Left Ventricle	heart
4	chr6:25306600-25331400	Weak transcription	Spleen	Spleen
5	chr6:25310200-25314200	Enhancers	Fetal Intestine Small	intestine
6	chr6:25310200-25316800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:25310400-25319400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:25310800-25315000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:25311200-25314000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:25311400-25314400	Enhancers	Osteobl	bone
11	chr6:25311600-25314000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:25311600-25314200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:25311600-25314200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:25311600-25314400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:25311600-25315400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:25311600-25317200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:25311600-25317200	Enhancers	Fetal Lung	lung
18	chr6:25311800-25314000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:25312000-25314000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:25312000-25314200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:25312000-25315600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:25312000-25315600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:25312000-25324200	Weak transcription	Esophagus	oesophagus
24	chr6:25312000-25324200	Weak transcription	Pancreas	Pancrea
25	chr6:25312200-25315600	Weak transcription	Right Atrium	heart
26	chr6:25312200-25316000	Weak transcription	Gastric	stomach
27	chr6:25312400-25314200	Enhancers	Thymus	Thymus
28	chr6:25312600-25315600	Weak transcription	Fetal Thymus	thymus
29	chr6:25312800-25314000	Enhancers	Small Intestine	intestine
30	chr6:25313200-25314000	Enhancers	NHEK	skin
31	chr6:25313400-25314000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:25313400-25314000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:25313400-25314000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:25313400-25314200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:25313400-25314200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:25313400-25314200	Enhancers	Ovary	ovary
37	chr6:25313400-25314200	Enhancers	HMEC	breast
38	chr6:25313400-25315400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:25313400-25315400	Weak transcription	Fetal Heart	heart
40	chr6:25313400-25329800	Weak transcription	Primary T cells from cord blood	blood
41	chr6:25313600-25314000	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:25313600-25314000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:25313600-25314000	Enhancers	Placenta	Placenta
44	chr6:25313600-25314200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:25313600-25314200	Enhancers	NHDF-Ad	bronchial
46	chr6:25313600-25314200	Enhancers	NHLF	lung
47	chr6:25313600-25314400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:25313600-25315200	Enhancers	HSMMtube	muscle
49	chr6:25313600-25315400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:25313600-25316200	Enhancers	Fetal Brain Male	brain

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