Variant report

Variant	rs9358855
Chromosome Location	chr6:25412064-25412065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25409840..25412613-chr6:25418004..25420137,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6456680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1850810	chr6:25405576-25462543	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25405200-25413200	Weak transcription	Fetal Lung	lung
2	chr6:25405800-25412600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:25406000-25413200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:25406400-25420200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:25407200-25413200	Weak transcription	Spleen	Spleen
6	chr6:25407200-25420200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:25407800-25412600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:25408000-25413200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:25408200-25412800	Weak transcription	Aorta	Aorta
10	chr6:25408200-25413000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:25408400-25413000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:25408400-25413200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:25408400-25415400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:25408400-25416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:25408600-25417200	Weak transcription	Primary B cells from cord blood	blood
16	chr6:25408800-25412800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:25409000-25413200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:25409000-25419000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:25409800-25413600	Weak transcription	Stomach Mucosa	stomach
20	chr6:25409800-25415200	Enhancers	Small Intestine	intestine
21	chr6:25410400-25413600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr6:25410400-25414000	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:25410400-25415600	Enhancers	Thymus	Thymus
24	chr6:25410600-25413600	Enhancers	Fetal Intestine Small	intestine
25	chr6:25410600-25413800	Enhancers	Fetal Intestine Large	intestine
26	chr6:25410800-25413000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:25411000-25412400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:25411000-25412600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr6:25411000-25412600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:25411000-25412800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:25411000-25413000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:25411000-25413000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:25411000-25413000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:25411000-25413200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:25411000-25413200	Weak transcription	Adipose Nuclei	Adipose
36	chr6:25411000-25413400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:25411000-25413400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:25411000-25413400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:25411000-25413600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:25411000-25414600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:25411000-25415000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr6:25411000-25415000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:25411000-25451800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:25411600-25412200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr6:25411600-25412200	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:25411600-25412400	Weak transcription	Fetal Thymus	thymus
47	chr6:25411600-25412400	Weak transcription	Gastric	stomach
48	chr6:25411600-25412600	Weak transcription	Pancreas	Pancrea
49	chr6:25411600-25413000	Weak transcription	Right Atrium	heart
50	chr6:25411600-25413800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links