Variant report

Variant	rs9359033
Chromosome Location	chr6:74160447-74160448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:74160323..74161865-chr6:74226774..74228460,2	MCF-7	breast:
2	chr6:74160192..74161982-chr6:74293563..74295247,2	MCF-7	breast:
3	chr6:74158484..74160884-chr6:74318973..74320604,2	MCF-7	breast:
4	chr6:74157393..74162572-chr6:74229200..74231801,6	MCF-7	breast:
5	chr6:74102482..74106495-chr6:74159619..74163030,5	MCF-7	breast:
6	6:74000304-74012200..6:74160392-74184826	K562	blood:
7	chr6:74159742..74161867-chr6:74173139..74174851,2	MCF-7	breast:
8	chr6:74153322..74156894-chr6:74159948..74162165,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234882	Chromatin interaction
ENSG00000164430	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000207023	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000080007	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3013725	0.80[ASN][1000 genomes]
rs610913	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341423	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
4	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9359033	MTO1	Cis_1M	lymphoblastoid	RTeQTL
rs9359033	EEF1A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74125400-74160800	Weak transcription	Gastric	stomach
2	chr6:74129000-74160600	Weak transcription	HSMMtube	muscle
3	chr6:74130000-74160600	Weak transcription	NHEK	skin
4	chr6:74130200-74160800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:74130600-74160800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:74132200-74160800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:74142400-74160800	Weak transcription	Liver	Liver
8	chr6:74145000-74160800	Weak transcription	Pancreas	Pancrea
9	chr6:74146800-74160600	Weak transcription	Aorta	Aorta
10	chr6:74148000-74160800	Weak transcription	NH-A	brain
11	chr6:74149800-74160600	Weak transcription	Ovary	ovary
12	chr6:74150200-74160600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:74150200-74160800	Weak transcription	Fetal Intestine Large	intestine
14	chr6:74157800-74162200	Active TSS	GM12878-XiMat	blood
15	chr6:74158600-74162600	Active TSS	Hela-S3	cervix
16	chr6:74158800-74160800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:74159000-74162200	Active TSS	Duodenum Mucosa	Duodenum
18	chr6:74159200-74160800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr6:74159200-74161000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:74159200-74162000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr6:74159200-74162400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:74159400-74160600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr6:74159400-74160600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:74159400-74160800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:74159400-74161800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr6:74159400-74162200	Active TSS	Colonic Mucosa	Colon
27	chr6:74159400-74162400	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:74159600-74160800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:74159600-74160800	Weak transcription	Spleen	Spleen
30	chr6:74159600-74161400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:74159600-74162000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:74159600-74162200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:74159600-74162200	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr6:74159600-74162400	Active TSS	A549	lung
35	chr6:74159800-74160800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:74159800-74161000	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr6:74159800-74161200	Active TSS	Primary T cells fromperipheralblood	blood
38	chr6:74159800-74161200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:74159800-74161400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:74159800-74162200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:74159800-74162200	Active TSS	Rectal Smooth Muscle	rectum
42	chr6:74159800-74162400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:74160000-74160800	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr6:74160000-74160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:74160000-74160800	Weak transcription	Small Intestine	intestine
46	chr6:74160000-74161000	Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr6:74160000-74161200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr6:74160000-74162200	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr6:74160000-74162200	Flanking Active TSS	Fetal Thymus	thymus
50	chr6:74160200-74160800	Active TSS	HUES6 Cell Line	embryonic stem cell

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