Variant report

Variant	rs9359179
Chromosome Location	chr6:77052288-77052289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10943351	1.00[AFR][1000 genomes]
rs9343405	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9350635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9350647	1.00[AFR][1000 genomes]
rs9352301	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028764	chr6:76870971-77145573	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886191	chr6:76978303-77052331	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886194	chr6:76999513-77052331	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv886195	chr6:76999513-77097008	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1848720	chr6:76999513-77100253	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv886199	chr6:77016346-77052331	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv886201	chr6:77016346-77097008	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1831068	chr6:77016346-77100461	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv520032	chr6:77018159-77052331	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv886203	chr6:77018159-77052331	Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv1828804	chr6:77018159-77100198	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1830609	chr6:77018159-77100253	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1833338	chr6:77018159-77100461	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1842856	chr6:77018159-77100461	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1848102	chr6:77018159-77100461	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1816554	chr6:77027034-77100253	ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77052200-77052600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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