Variant report

Variant	rs9360362
Chromosome Location	chr6:69525365-69525366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16900411	1.00[YRI][hapmap]
rs2022212	0.89[JPT][hapmap];0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69523000-69527400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:69523400-69535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69524800-69525400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69525000-69525400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:69525000-69525400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:69525000-69525400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:69525000-69525400	Enhancers	Brain Germinal Matrix	brain
9	chr6:69525000-69525600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:69525200-69525400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:69525200-69525400	Enhancers	Brain Anterior Caudate	brain
12	chr6:69525200-69525800	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links