Variant report
| Variant | rs9360663 |
|---|---|
| Chromosome Location | chr6:74036468-74036469 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:165)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:7 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:73890367..73891378-chr6:74036227..74036958,3 | MCF-7 | breast: | |
| 2 | chr6:73995184..73996292-chr6:74036159..74036919,3 | MCF-7 | breast: | |
| 3 | chr6:73121709..73122634-chr6:74035964..74037244,6 | MCF-7 | breast: | |
| 4 | chr6:73121726..73122573-chr6:74036126..74036963,2 | K562 | blood: | |
| 5 | chr6:73995073..73995767-chr6:74036342..74037050,3 | MCF-7 | breast: | |
| 6 | chr6:74036160..74036840-chr6:74098186..74098994,2 | MCF-7 | breast: | |
| 7 | chr6:74019132..74021037-chr6:74035102..74038001,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PAICSP3 | TF binding region |
| ENSG00000135314 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs9360664 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410973 | chr6:73716033-74419545 | Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
| 2 | nsv518874 | chr6:74014468-74041424 | Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv970337 | chr6:74034657-74048673 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:74036000-74037000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
