Variant report

Variant	rs9361086
Chromosome Location	chr6:77297903-77297904
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12175530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527869	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13194599	0.89[AMR][1000 genomes]
rs1457968	0.82[ASN][1000 genomes]
rs1457971	0.82[ASN][1000 genomes]
rs34588495	0.81[AMR][1000 genomes]
rs35816720	0.81[AMR][1000 genomes]
rs36029576	0.89[AMR][1000 genomes]
rs71561468	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71561472	0.89[AMR][1000 genomes]
rs9341586	0.85[AMR][1000 genomes]
rs9341588	0.85[AMR][1000 genomes]
rs9343473	0.85[AMR][1000 genomes]
rs9350666	0.81[AMR][1000 genomes]
rs9352361	0.85[AMR][1000 genomes]
rs9352363	0.85[AMR][1000 genomes]
rs9352365	0.85[AMR][1000 genomes]
rs9352367	0.89[AMR][1000 genomes]
rs9361089	0.81[AMR][1000 genomes]
rs9361091	0.85[AMR][1000 genomes]
rs9361092	0.85[AMR][1000 genomes]
rs9361096	0.85[AMR][1000 genomes]
rs9361097	0.85[AMR][1000 genomes]
rs9361102	0.89[AMR][1000 genomes]
rs9361103	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025439	chr6:77093795-77479689	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538320	chr6:77093795-77479689	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886208	chr6:77130167-77317683	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886210	chr6:77192263-77317683	Active TSS Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886211	chr6:77208816-77317683	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886212	chr6:77208816-77340148	Weak transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv886213	chr6:77212059-77317683	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv830700	chr6:77246037-77382238	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv886214	chr6:77247004-77317683	ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1029793	chr6:77259011-77448806	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv886215	chr6:77275598-77382995	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1026054	chr6:77294100-77479689	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77284600-77303000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:77285200-77302000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:77285800-77301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:77288600-77302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:77288800-77303400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:77289000-77303600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:77296800-77298000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:77297800-77302000	Weak transcription	HUVEC	blood vessel

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