Variant report

Variant	rs9361767
Chromosome Location	chr6:64151093-64151094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10755410	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10806215	0.90[ASN][1000 genomes]
rs10943823	0.82[ASN][1000 genomes]
rs11759194	0.86[ASN][1000 genomes]
rs12196062	0.92[ASN][1000 genomes]
rs12213364	0.86[ASN][1000 genomes]
rs13206102	0.82[ASN][1000 genomes]
rs1612517	0.81[ASN][1000 genomes]
rs1615166	0.80[ASN][1000 genomes]
rs1681932	0.82[ASN][1000 genomes]
rs1681944	0.81[ASN][1000 genomes]
rs1681948	0.82[ASN][1000 genomes]
rs1741801	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1744133	0.81[ASN][1000 genomes]
rs1744135	0.81[ASN][1000 genomes]
rs1744152	0.82[ASN][1000 genomes]
rs1744158	0.82[ASN][1000 genomes]
rs1744161	0.82[ASN][1000 genomes]
rs1969717	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2076874	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2096346	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2146149	0.82[ASN][1000 genomes]
rs2146150	0.82[ASN][1000 genomes]
rs2146151	0.82[ASN][1000 genomes]
rs2146152	0.82[ASN][1000 genomes]
rs2186011	0.93[ASN][1000 genomes]
rs2250179	0.89[ASN][1000 genomes]
rs2448774	0.85[ASN][1000 genomes]
rs2622276	0.84[ASN][1000 genomes]
rs2622280	0.81[ASN][1000 genomes]
rs2622281	0.82[ASN][1000 genomes]
rs2622282	0.80[ASN][1000 genomes]
rs2622283	0.82[ASN][1000 genomes]
rs2622284	0.82[ASN][1000 genomes]
rs2622285	0.82[ASN][1000 genomes]
rs2622286	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2622307	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2753066	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2758224	0.82[ASN][1000 genomes]
rs2758225	0.82[ASN][1000 genomes]
rs2758226	0.81[ASN][1000 genomes]
rs2758232	0.82[ASN][1000 genomes]
rs2758247	0.82[ASN][1000 genomes]
rs2758250	0.82[ASN][1000 genomes]
rs2758259	0.82[ASN][1000 genomes]
rs2800017	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2800018	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2800023	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2800027	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2800028	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2800049	0.82[ASN][1000 genomes]
rs2800050	0.82[ASN][1000 genomes]
rs2800051	0.82[ASN][1000 genomes]
rs2800052	0.83[ASN][1000 genomes]
rs4299811	0.84[ASN][1000 genomes]
rs4358600	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4445042	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4482958	0.84[ASN][1000 genomes]
rs4557499	0.84[ASN][1000 genomes]
rs4710254	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4710255	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710430	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4710431	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6454235	0.82[ASN][1000 genomes]
rs6454236	0.82[ASN][1000 genomes]
rs6919709	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6924479	0.89[ASN][1000 genomes]
rs6929702	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6938965	0.84[ASN][1000 genomes]
rs6939324	0.82[ASN][1000 genomes]
rs6939983	0.93[ASN][1000 genomes]
rs6942342	0.89[ASN][1000 genomes]
rs7742595	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7745873	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7763834	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294196	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9294197	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9294198	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9294202	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9294206	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9294215	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294229	0.87[ASN][1000 genomes]
rs9294234	0.84[ASN][1000 genomes]
rs9341841	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9341893	0.83[ASN][1000 genomes]
rs9344090	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9344129	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344137	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344168	0.93[ASN][1000 genomes]
rs9344188	0.89[ASN][1000 genomes]
rs9350913	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9350929	0.89[ASN][1000 genomes]
rs9352960	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353004	0.89[ASN][1000 genomes]
rs9353015	0.84[ASN][1000 genomes]
rs9353016	0.84[ASN][1000 genomes]
rs9353017	0.84[ASN][1000 genomes]
rs9353023	0.82[ASN][1000 genomes]
rs9359467	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361762	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361779	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9361816	0.87[ASN][1000 genomes]
rs9361827	0.85[ASN][1000 genomes]
rs9361829	0.87[ASN][1000 genomes]
rs9361838	0.84[ASN][1000 genomes]
rs9361844	0.84[ASN][1000 genomes]
rs9443919	0.86[ASN][1000 genomes]
rs9443921	0.87[ASN][1000 genomes]
rs9443931	0.84[ASN][1000 genomes]
rs9449233	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9449291	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9449295	0.81[AMR][1000 genomes]
rs9449297	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9449312	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9361767	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64146600-64158000	Weak transcription	Hela-S3	cervix
2	chr6:64149400-64152400	Active TSS	A549	lung
3	chr6:64149600-64152400	Enhancers	HepG2	liver
4	chr6:64150400-64151400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:64150400-64151600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:64150600-64151800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:64150800-64151800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:64150800-64152400	Active TSS	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links